Publications by Current NYU MSTP Fellows

Aras, R.A., Kang, J., Tschumi, A, Harasaki, Y. and Blaser, M.J. (2003). Extensive repetitive DNA facilitates prokaryotic genome plasticity. Proc Natl Acad Sci U S A. 11; 100(23): 13579-13584.

Babu, K.S., Debowy, D.J., Hall, A.L., Brown, A.S., Bailey, J.M., Bloomfield, S. and Gardner, E.P. (2003). Grasp strategy-related responses of posterior parietal cortical (PPC) neurons during a trained prehension task. Soc. Neurosci., Abstr. 29.

Babu, K.S, Debowy, D.J., Ghosh, S., Hu, E.H., Natiello, M., Harris, A. and Gardner, E.P. (2000). Spike burst analysis: A tool for analysing trained prehension behaviors recorded with digital video.
Soc. Neurosci. Abstr. 26(2):2202.

Bai, C.B., Auerbach, W, Lee, J.S., Stephen, D. and Joyner, A.L. (2002) Gli2, but not Gli1, is required for initial Shh signaling ectopic activation of the Shh pathway. Development. 129:4753-4761.

Balciunaite, E., Spektor, A., Lents, N. H., Cam, H., Te Riele, H., Scime, A., Rudnicki, M. A., Young, R., and Dynlacht, B. D. (2005). Pocket protein complexes are recruited to distinct targets in quiescent and proliferating cells. Mol Cell Biol. 25, 8166-8178

Berger, Z.D. (2003). Bayesian and frequent models: Legitimate choices for different purposes. Amer. College of Epidemiology, Annual Scientific Sessions. (Abstract).

Bivona, T.G., Wiener, H.H., Ahearn, I.M., Silletti, J., Chiu, V.K. and Philips, M.R. (2004). Rap1 up-regulation and activation on plasma membrane regulates T cell adhesion. J Cell Biol. 164(3): 461-70.

Bivona, T.G, Perez De Castro, I., Ahearn, I.M., Grana, T.M., Chiu, V.K., Lockyer, P.J., Cullen, P.J., Pellicer, A., Cox, A.D. and Philips, M.R. (2003). Phospholipase Cgamma activates Ras on the Golgi apparatus by means of RasGRP1. Nature. 424:694-698.

Boesen, C.C., Olsen, S.K., Ibrahimi, O.A., Eliseenkova, A.V., Mohammadi, M. (2005). Crystal structure of FGF19 ligand: a novel mode of heparin-binding. Manuscript in preparation.

Bruna-Romero, O., Schmieg, J., Del Val, M., Buschle, M. and Tsuji, M. (2003). The dendritic cell-specific chemokine, dendritic cell-derived CC chemokine 1, enhances protective cell-mediated immunity to murine malaria. J. Immunol. 170: 3195-203.

Butt, S. J. B.*, Fuccillo, M.V.*, Nery, S., Noctor, S., Kriegstein, A., Corbin, J.G., and Fishell G. The Temporal and Spatial Origins of Cortical Interneurons Predicts their Physiological Subtype. Neuron (in press)

Cam, H., Balciunaite, E., Blais, A., Spektor, A., Scarpulla, R. C., Young, R., Kluger, Y., and Dynlacht, B. D. (2004). A common set of gene regulatory networks links metabolism and growth inhibition. Mol Cell. 16, 399-411.

Cardinale, C,J., Ko, K., Dworkin, L.D., Shaw, A.S., Skolnik, E.Y. (2003). A potential role for integrin beta 6-mediated activation of TGF-beta in the progression of chronic renal disease. Journal of the American Society of Nephrology. 14:373a-373a.

Chang, W., Dynek, J.N, Smith, S. (2005). NuMA is a major acceptor of poly(ADP-ribosyl)ation by tankyrase 1 in mitosis.  Accepted for publication by Biochemical Journal.

Chang, W., Dynek, J.N., Smith, S. (2003). TRF1 is degraded by ubiquitin-mediated proteolysis after release from telomeres.   Genes and Development  17: 1328-1333

Chen, G., Schmieg, J., Tsuji, M., and Franck, R.W. (2004). Efficient synthesis of alpha-C-galactosyl ceramide immunostimulants: use of ethylene-promoted olefin cross-metathesis. Org. Lett. 6:4077-80.

Cheng, S.K., Olale, F., Brivanlou, A.H. and Schier, A.F. (2004). Lefty Blocks a Subset of TGF-beta Signals by Antagonizing EGF-CFC Coreceptors. PLoS Biol, 2(2): E30.

Cheng, S.K., Olale, F., Bennett, J.T., Brivanlou, A.H. and Schier, A.F. (2003). EGF-CFC Proteins are essential coreceptors for the TGF-beta signals Vg1 and GDF1. Genes Dev. 17(1):31-6.

Collins, A. and Littman, D.R. (2005). Selection and Lineage Specification in the Thymus: Commitment 4-Stalled. Immunity 23: 4-5.

Cook, B.D., Dynek, J.N., Chang, W ., Shostak, G., and Smith, S.  (2002).  A role for the related PARPs tankyrase1 and tankyrase2 at human telomeres. Mol Cell Biology  22: 332-342.

Davis, B.M., Kimsey, H.H., Chang, W ., and Waldor, M.K.  (1999). The vibrio cholerae O139 calcutta bacteriophage CTXphi is infectious and encodes a novel repressor. J Bacteriol. 181:6779-6787.

Debowy, D.J., Babu, K.S., Bailey, J.M., Brown, A.S., Hall, A.L. Herzlinger, M. and Gardner, E.P. (2004). Neuroinformatics tools and analyses of object feature selectivity during prehension: A digital video study of posterior parietal cortical (PPC) neurons. HBP Annual Conf. Abstr. 6.

Debowy, D.J., Babu, K.S., Ghosh, S., Hall, A.L. and Gardner, E.P. (2003). Population responses of posterior parietal cortex (PPC) neuons during a trained prehension task. Soc. Neurosci. Abstr. 29.

Debowy, D.J., Babu, K.S., Hall, A. and Gardner E.P. (2002). Posterior parietal cortex spike trains are linked to hand posture and object shape during prehension. Soc. Neurosci. Abstr. 28.

Debowy, D.J., Ghosh, S., Ro, J.Y., and Gardner, E.P. (2001). Comparison of neuronal firing rates in somatosensory posterior parietal cortex during prehension. Exp. Brain Res. 137(3-4):269-91.

Debowy, D.J., Babu, K.S., Natiello, M., and Gardner, E.P. (2001). How the right hand knows what the left hand is doing: Bilateral activity in posterior parietal cortex (PPC). Soc. Neurosci. Abstr., 27.

Debowy, D.J., Babu, K.S. Hu, E.H., Ghosh, S., Harris, A., Natiello, M.and Gardner, E.P. (2000). Spike burst analysis: A tool for analyzing trained prehension behaviors recorded with digital video. Soc. Neurosci. Abstr. 26(2):2202.

Debowy, D., Ro, J.Y., Ghosh, S., and Gardner, E.P. (1999). S-I and posterior parietal cortical neurons are sensitive to target shape during prehension. Soc. Neurosci. Abstr. 25:2195.

Debowy, D., Ghosh, S., Ro, J.Y. and Gardner, E.P. (1998). Area 3B-1 neurons monitor specific task stages during prehension. Soc. Neurosci. Abstr. 24:1127.

Debowy, D, Lu, S., Ro, J.Y., and Gardner, E.P. (1997). Software instruments for quantifying digital video spike trains. Soc. Neurosci. Abstr. 23:1552.

Deng, J., Lu, P.D., Zhang, Y., Scheuner, D., Kaufman, R.J., Sonenberg, N., Harding, H.P. and Ron, D. (2004). Translational repression mediates activation of Nuclear Factor Kappa B by phosphorylated translation initiation factor 2. (In press) Mol Cell Biol.

Dustin, ML; Jiyun, K; Lieberthal, J; Littman, DR; Davalos, D; and Wenbiao, G. (2004). Neural and immune synaptic relations [Abstract]. Journal of Neuroimmunology. 154:5

Foong, H., Ibrahimi, O.A., Elpern, D.J. (2005). Multiple Facial Seborrheic Keratosis-like lesions in a young adult with Epidermodysplasia Verruciformis. Manuscript in preparation.

Fournier, E., Isakoff, S.J., Ko, K., Cardinale, C.J., Giorgio G. Inghirami, G.G., Li, Z., de Lafaille, M. A., and Skolnik, E.V. (2003). The B Cell SH2/PH Domain-Containing Adaptor Bam32/DAPP1 Is Required for T Cell-Independent II Antigen Responses. Curr. Biol. 13(21): 1858-66.

Friedman-Jimenez, G., Sturm, T.M., Reibman, J., Harrison, D., Rom, W.N., Zhang, S., Berger, Z. and Matte, T. (2003). Validation of a brief questionnaire to screen asthmatic outpatients for asthma symptoms that are worse in relation to work. Specific task stages during prehension. Poster presentation ATS, 99th Intl. Conf. American Thoracic Soc., Seattle, WA.
Soc. Neurosci. Abstr. 24:1127.

Fuccillo, M.V., Rallu, M., McMahon A.P., and Fishell G. Temporal Requirement for Hedgehog Signaling in Ventral Telencephalic Patterning. Development 131: 5031-5040

Furman, B.D., Schmieg, J.J., Bhattacharyya, S., and Li, S. (1999). Assessment of backside polyethylene wear in three different metal backed total knee designs. Orthopaedic Research Society, 45th annual meeting.

Furman, B.D., Schmieg, J.J., Bhattacharyya, S., and Li, S. (1999). The determination of ‘backside wear’ in retrieved tibial inserts with four different locking mechanisms. Society for Biomaterials, 25th annual meeting.

Furman, B.D., Gillis, A.M., Schmieg, J.J., Bhattacharyya, S., and Li, S. (1999). Wear and damage to the post in posterior stabilized total knee replacements: an unexpected source of polyethylene debris. Society for Biomaterials, 25th annual meeting.

Gardner, E.P., Babu, K.S., Hall, A.L., Bailey, J.M., Brown, A.S. and Debowy, D.J. (2003). Object-related response preferences of posterior parietal cortex (PPC) neurons during a trained prehension task. Soc. Neurosci., Abstr. 29.

Gardner, E.P., Debowy, D.J., Ro, J.Y., Ghosh, S., and Babu, K.S. (2002). Sensory monitoring of prehension in the parietal lobe: a study using digital video. Behav. Brain Research 135: 213-24.

Gardner, E.P., Babu, K.S., Natiello, M., and Debowy, D.J. (2001). How the right hand coordinates with the left during synergistic hand interactions. Soc. Neurosci. Abstr., 27.

Gardner, E., Ro, J.Y., Debowy, D., and Ghosh, S. (1999). Facilitation of neuronal activity in somatosensory and posterior parietal cortex during prehension. Exp. Brain Res., 127:329-354.

Gardner, E.P., Debowy, D., Ro, J.Y., and Ghosh, S. (1999). Posterior parietal cortex may initiate goal-directed actions of the hand. Soc. Neurosci. Abstr. 25: 2196.

Gardner, E.P., Ro, J.Y., Debowy, D. and Ghosh, S. (1998). Facilitation of neuronal activity in sensorimotor cortex during prehension. Soc. Neurosci. Abstr. 24:1127.

Ghosh, S., Ro, J.Y., Debowy, D. and Gardner, E.P. (1998). Area 1-2 and 5 neurons monitor hand kinematics during prehension. Soc. Neurosci. Abstr. 24: 1126.

Gillis, A.M., Schmieg, J.J., Bhattacharyya, S., and Li, S. (1999). An independent evaluation of the mechanical, chemical and fracture properties of UHMWPE cross linked by 34 different conditions. Orthopaedic Research Society, 45th annual meeting.

Gonzalez-Aseguinolaza, G., Van Kaer, L., Bergmann, C.G., Wison, J.M., Schmieg, J., Kronenberg, M., Nakayama, T., Tani-guchi, M., Koezuka, Y., and Tsuji, M. (2002). Natural killer T cell ligand alpha-galactosylceramide enhances protective immunity induced by malaria vaccines. J. Exp. Med.195:617-624.

Gonzalez-Aseguinolaza, G., Schmieg, J., Berraondo, P., Ochoa, L. and Tsuji, M. (2002). The involvement of CD1d-restricted NKT cells in infectious processes. Inmunologia, 21 (3): 145-155.

Goldberg E.M., Watanabe, S., Chang, S.Y., Joho, R.H., Huang, Z.J., Leonard, C.S., Rudy, B. (2005). Specific functions of synaptically localized potassium channels in synaptic transmission at the neocortical GABAergic fast-spiking cell synapse. Journal of Neuroscience 25: 5230-5.

Harding, H.P., Zhang, Y., Zeng, H., Novoa, I., Lu, P.D., Calfon, M., Sadri, N., Yun, C., Popko, B., Paules, R., Stojdl, D.F., Bell, J.C., Hettmann, T., Leiden, J.M. and Ron, D. (2003). An integrated stress response regulates amino acid metabolism and resistance to oxidative stress. Mol. Cell. 11(3):619-33.

Houghtaling, B.R., Cuttonaro, L., Chang, W. , and Smith, S.  (2004). A dynamic molecular link between the telomere length regulator TRF1 and the chromosome end protector TRF2.   Current Biology 14: 1621-1631 .

Ibrahimi, O.A., Yeh, B.K., Eliseenkova, A.V., Zhang, F., Olsen, S.K., Igarashi, M., Aaronson, S.A., Linhardt, R.J., Mohammadi, M. (2005). Analysis of mutations in FGF and a pathogenic mutation in FGFR provide support for the “two-end” model for FGFR dimerization. Molecular and Cellular Biology. 25 (2) 671-84.

Ibrahimi, O.A., Chiu, E.S., McCarthy, J.G., Mohammadi, M. (2005). Understanding the Molecular Basis of Apert Syndrome. Plastic and Reconstructive Surgery. 115(1) 264-70.

Ibrahimi, O.A., Chiu, E.S., McCarthy, J.G. and Mohammadi M. (2004). Understanding the molecular basis of Apert syndrome. Plastic and Reconstructive Surgery. In press.

Ibrahimi, O.A., Zhang, F., Eliseekova, A.V., Linhardt, R.J., Mohammadi, M. (2004) Proline to Arginine Mutations in FGF Receptors 1 and 3 Result in Pfeiffer and Muenke Craniosynostosis Syndromes Through Enhancement of FGF Binding Affinity. Human Molecular Genetics. (13) 69-78.

Ibrahimi, O.A., Zhang, F., Eliseenkova, A.V., Itoh, N., Linhardt, R.J., Mohammadi, M. (2004). Biochemical analysis of pathogenic ligand-dependent FGFR2 mutations suggests distinct pathophysiological mechanisms for craniofacial and limb abnormalities. Human Molecular Genetics. (19): 2313-24.

Ibrahimi, O.A., Zhang, F., Hrstka, S.C.L; Mohammadi, M., Linhardt, R.J. (2004). Kinetic Model for FGF, FGFR and Proteoglycan Signal Transduction Complex Assembly. Biochemistry. (16) 4724-30.

Ibrahimi, O.A., Eliseenkova, A.V., Plotnikov, A.N., Yu, K., Orntiz, D.M., and Mohammadi, M. (2001). Structural Basis for Fibroblast Growth Factor 2 Activation in Apert Syndrome. Proc. Natl. Acad. Sci. U.S.A., 98: 7182-87.

Ibrahimi, O.A. and Mohammadi, M. Hu, E.H., and Bloomfield, S.A. (2000). Modulation of the tracer coupling pattern of alpha ganglion cells in the rabbit retina [ARVO Abstract Nr 4979]. Invest Ophthalmol Vis Sci. 41(4): S936.

Ibrahimi, O.A., Li, W., Zhao, K., and Zhang, Z.Y. (2000). Synthesis and Characterization of a Novel Class of Protein Tyrosine Phosphatase Inhibitors. Abstracts of Papers of the American Chemical Society. 219: 23.

Ibrahimi, O.A., Wu, L., Zhao, K., and Zhang, Z.Y. (2000). Synthesis and Characterization of a Novel Class of Protein Tyrosine Phosphatase Inhibitors. Bioorganic and Medicinal Chemistry Letters. 10(5): 457-60.

Jousse, C., Oyadomari, S., Novoa, I., Lu, P., Zhang, Y., Harding, H.P. and Ron, D. (2003). Inhibition of a constitutive translation initiation factor 2a phosphatase, CReP, promotes survival of stressed cells. J Cell Biol. 163:767-775.

Kang, J., Huang, S. and Blaser, M.J. (2005). Structural and functional divergence of MutS2 from bacterial MutS1 and eukaryotic MSH4-5 homologs. J Bacteriol. 187(10):3528-37.

Kang, J., Travakoli, D., Tschumi, A., Aras, R.A. and Blaser, M.J. (2004). Effect of host species on recG phenotypes in Helicobacter pylori and Escherichia coli. J Bacteriol. 186(22):7704-13.

Keegan, B.R., Feldman, J.L., Begemann, G., Ingham, P.W., and Yelon, D. (2005). Retinoic acid signaling restricts the cardiac progenitor pool. Science. 14;307(5707):247-9.

Keegan, B.R., Meyer, D., and Yelon, D. (2004). Organization of cardiac chamber progenitors in the zebrafish blastula. Development.
131(13):3081-91.

Keegan, B.R., Feldman, J.L., Lee, D.H., Koos, D.S., Ho, R.K., Stainier, D.Y. and Yelon, D. (2002). The elongation factors Pandora/Spt6 and Foggy/Spt5 promote transcription in the zebrafish embryo. Develop, 129(7): 1623-32.

Kim, S.K., Selleri, L., Lee, J.S., Zhang, A.Y., Gu, X., Jacobs, Y., and Cleary, M.L. (2002). Pbx1 inactivation disrupts pancreas development and in Ipf1-deficient mice promotes diabetes mellitus. Nat. Genet. 30(4): 430-5.

Kim, S.-S., Zhang, R.-G., Braunstein, S.E., Joachimiak, A., Cvekl, A. and Hegde, R.S. (2002). Structure of the retinal determination protein Dachshund reveals a DNA-binding motif. Structure. 10(6): 787-95.

Kramer-Zucker, A.G., Olale, F., Haycraft, C.J., Yoder, B.K., Schier, A.F., and Drummond, I.A. (2005). Cilia-driven fluid flow in the zebrafish pronephros, brain and Kupffer's vesicle is required for normal organogenesis. Development. 132(8):1907-21

Kunwar, P.S, Zimmerman, .S, Bennett, J.T., Chen, Y, Whitman, M and, Schier AF. (2003). Mixer/Bon and FoxH1/Sur have overlapping and divergent roles in Nodal signaling and mesendoderm induction. Devel. 130:5589-5599.

Kuryatov, A., Olale, F,A., Cooper, J., Choi, .C, and Lindstrom, J. (2000). Human ?6 AChR Subtypes: Subunit Composition, Assembly, and Pharmacological Responses. Neuropharm. 39(13): 2570-90.

Lee, F.S., Rajagopal, R., Kim, A.H., Chang, P.C., and Chao, M.V. (2002). Activation of Trk neurotrophin receptor signaling by pituitary adenylate cyclase-activating polypeptides (PACAPs). J Biol Chem., 277(11): 9096-102.

Lee, F.S., Rajagopal, R. and Chao, M.V. (2002). Distinctive features of Trk neurotrophin receptor transactivation by G protein-coupled receptors. Cytokine Growth Factor Rev. 13(1): 11-7.

Lentz, D.L., Clark, A.M., Hufford, C.D., Meurer-Grimes, B., Passreiter, C.M., Cordero, J., Ibrahimi, O., Okunade, A.L. (1998). Antimicrobial Properties of Honduran Medicinal Plants. Journal of Ethnopharmacology. (63) 253-263.

Li, S., Scuderi, G., Furman, B.D., Bhattacharyya, S., Schmieg, J.J., and Insall, J.N. (2002). Assessment of backside wear from the analysis of 55 retrieved tibial inserts. Clin. Orthop. 404: 75-82.

Lu, P.D., Harding, H.P. and Ron, D. (2004). Translation reinitiation at alternative open reading frames regulates gene expression in an integrated stress response. J Cell Biol. 167(1):27-33.

Lu, P.D., Jousse, C., Marciniak, S.J., Zhang, Y., Novoa, I., Scheuner, D., Kaufman, R.J., Ron, D. and Harding, H.P. (2004). Cytoprotection by pre-emptive conditional phosphorylation of translation initiation factor 2. EMBO J. 23:169-179.

Mandler, R., Hinson, E.R., Davis, M.Y., Sausville, E.A., Newman, D.J., Yang, D. Roettinger, A.J., Brechbiel, M.W., and Waldmann, T.A. (2001). Herceptin: Geldanamycin immunoconjugates augment the efficacy of Herceptin in mice bearing HER2-overexpressing xenografts. Clin. Cancer Res. 7(11): 3786S.

Michaelson, D., Ahearn, I., Bergo, M., Young, S., and Philips, M. (2002). Membrane trafficking of heterotrimeric G proteins via the endoplasmic reticulum and Golgi. Mol Biol Cell. 13(9):3294-302.

Mohammadi, M., Olsen, S.K. and Ibrahimi, O.A. (2005). Structural basis for FGF-FGFR binding and dimerization. Cytokine and Growth Factor Reviews. 16(2) 107-37.

Nadal, M.S., Ozaita, A., Amarillo, Y., de Miera, E.V., Ma, Y., Mo, W., Goldberg, E.M., Misumi, Y., Ikehara, Y., Neubert, T.A. and Rudy, B. (2003). The CD26-related dipeptidyl aminopeptidase-like protein DPPX is a critical component of neuronal A-type K+ channels. Neuron. 37:449-61.

Olale, F.A., Kuryatov, A., Choi, C, and Lindstrom, J. (2000). Acetylcholine Receptor Extracellular Domain Determines Sensitivity to Nicotine-Induced Inactivation. Eur J Pharmacol. 393(1-3): 11-21.

Olsen, S.K., Ibrahimi, O.A., Eliseenkova, A.V., Mohammadi, M. (2005). Crystal structure of FGF20 ligand. Manuscript in preparation.

Olsen, S.K., Bromleigh, C., Ibrahimi, O.A., Eliseenkova, A.V., Zhang, F., Linhardt, R.J., Mohammadi, M. (2005). Crystal structure of the FGF8-FGFR2c complex reveals a novel mode of FGF-FGFR binding. Molecular Cell. Manuscript in submission.

Olsen, S.K., Ibrahimi, O.A., Raucci, A., Zhang, F., Eliseenkova, A.V., Yayon, A., Basilico, C., Linhardt, R.J., Schlessinge,r J. and Mohammadi, M. (2004). Insights into the molecular basis for fibroblast growth factor receptor autoinhibition and ligand-binding promiscuity. Proc. Natl. Acad. Sci. U S A. 101(4):935-40.

Pitteloud, N., Ibrahimi, O.A., Mohammadi, M., Crowley, W.F. Jr. (2005). Digenic inheritance of idiopathic hypogonadotropic hypogonadism with two different gene pairs. New England Journal of Medicine. Manuscript in submission.

Plotnikov, A. N., Eliseenkova, A. I., Ibrahimi, O.A., Sasisekharan, R., Lemmon, M.A., and Mohammadi, M. (2001). Crystal Structure of Fibroblast Growth Factor 9 (FGF9) Reveals Regions Implicated in Dimerization and Autoinhibition. J. Biol. Chem. 276(6): 4322-29.

Pollack, P., Ibrahimi, O.A., Mohammadi, M; Meltzer, P.S. (2005). Mutations in fibroblast growth factor receptor 2 are responsible for melanoma. Manuscript in preparation.

Ranganathan, V., Heine, W.F., Ciccone, D.N., Rudolph, K.L., Wu, X., Chang, S., Hai, H., Ahearn, I.M., Livingston, D.M,, Resnick, I., Rosen, F., Seemanova, E., Jarolim, P., DePinho, R.A., and Weaver, D.T. (2001). Rescue of a telomere length defect of Nijmegen breakage syndrome cells requires NBS and telomerase catalytic subunit. Curr Biol. 11(12):962-6.

Rajagopal, R., Chen, Z.Y., Lee, F.S. and Chao, M.V. (2004).
Transactivation of Trk neurotrophin receptors by G protein-coupled receptor ligands occurs on intracellular membranes. J Neurosci. 24(30): 6650-8.

Reitzen, S., Debowy, D.J. and Gardner, E.P. (2004). Kinematic analyses of prehension using digital video neuroinformatics tools. HBP annual Conf. Abstr. 6.

Ro, J.Y., Debowy, D., Ghosh, S, and Gardner E.P. (2000). Depression of neuronal activity in somatosensory and posterior parietal cortex during prehension. Exp. Brain Res., 135(1):1-11.

Ro, J.Y., Debowy, D., Lu, S., Ghosh, S. and Gardner, E. (1998). Digital video: A tool for correlating neuronal firing patterns with hand motor behavior. J. Neurosci. Meth., 82:215-231.

Ro, J.Y., Debowy, D., Ghosh, S., and Gardner, E.P. (1998). Suppression of neuronal activitiy in sensorimotor cortex during prehension. Soc. Neurosci. Abstr. 24: 1127.

Sauthoff, H., Pipiya, T., Heitner, S., Chen, S., Bleck, B., Reibman, J., Chang, W. , Norman , R.G., Rom, W.N., Hay, J.G.  (2004). Impact of E1a modifications on tumor-selective adenoviral replication and toxicity.
Mol Ther . 10(4):749-57.

Schmieg, J., Yang, G., Franck, R.W., Van Rooijen, N., and Tsuji, M. 2005. Glycolipid presentation to natural killer T cells differs in an organ-dependent fashion. Proc. Natl. Acad. Sci. U. S. A. 102: 1127-1132.

Schmieg, J., Yang, G., Franck, R.W. and Tsuji, M. (2003). Superior protection against malaria and melanoma metastases by a C-glycoside analogue of the natural killer T cell ligand beta-galactosylceramide. J. Exp. Med. 1;198(11):1631-41.

Schmieg, J., Gonzalez-Aseguinolaza, G, and Tsuji M. (2003). The role of natural killer T cells and other T cell subsets against infection by the pre-erythrocytic stages of malaria parasites. Microbes Infect. 5:499-506.

Schlessinger, J., Plotnikov, A. N., Ibrahimi, O.A., Eliseenkova, A. V., Yeh, B. K., Yayon, A., Linhardt, R. J., and Mohammadi, M. (2000). Crystal Structure of a Ternary FGF-FGFR-Heparin Complex Reveals a Dual Role for Heparin in FGFR Binding and Dimerization. Mol. Cell. 6:743-750.

Wang, S.Q., Ibrahimi, O.A., Li, P. and Zhao, K. (2004). N-alkoxyl templates for diastereoselective pyrrolidine synthesis. Chinese Chemical Letters.
15:1-4

Yan, L., Herrington, J., Goldberg, E., Dulski, P.M., Bugianesi, R.M., Slaughter, R.S., Banerjee, P., Brochu, R.M., Priest, B.T., Kaczorowski, G.J., Rudy, B., and Garcia, M.L. (2005). Stichodactyla helianthus peptide, a pharmacological tool for studying Kv3.2 channels. Molecular Pharmacology. 67: 1513-21.

Yang, G., Schmieg, J., Tsuji, M. and Franck, R.W. (2004). The C-glycoside analogue of the immunostimulant alpha-galactosylceramide (KRN7000): Synthesis and striking enhancement activity. Angew. Chem. Int. Ed. Engl. 43:3818-3822.

Yelon, D., Feldman, J.L, and Keegan, B.R. (2002). Genetic regulation of cardiac patterning in zebrafish. Cold Spring Harb Symp. Quant Biol.
67:19-25.

Yu, X., Ibrahimi, O.A., Goetz, R., Zhang, F., Davis, S.I., Garringer, H., Ornitz, D.M., Linhardt, R.J., Mohammadi, M., White, K.E. (2005). Analysis of the biochemical mechanisms for the endocrine actions of FGF23. Endocrinology. In press.

Zagha E., Ozaita, A., Chang, S.Y., Nadal, M.S., Lin, U., Saganich, M.J., McCormack, T., Akinsanya, K.O., Qi, S.Y., and Rudy, B. (2005). Dipeptidyl peptidase 10 modulates Kv4-mediated A-type potassium channels. J Biol Chem. 13;280(19):18853-61

Book Chapters

Debowy, D.J., Babu, K.S., Hu, E.H., Natiello, M., Reitzen, S., Chu, M., Sakai, J., and Gardner, E.P. (2002). New Applications of Digital Video Technology for Neurophysiological Studies of Hand Function. The Somatosensory System: Deciphering the Brain's Own Body Image. Randall J. Nelson, Eds., CRC Press, Boca Raton. pp. 219-41.

Ibrahimi, O.A., Mohammadi, M. Apert Syndrome. Molecular Mechanisms of Disease: an Encyclopedic Reference, F. Lang, Editor, Springer Publishing House, First Edition, In press, 2005.